Bracket

Knockout play-off

Omonia 2 PA Pafos 3

First leg 1–1 Second leg 1–2

OL Omonia Nicosia 2 PA Pafos 3

First leg 1–1 Second leg 1–2

HE FC Heidenheim 3 København 4

First leg 2–1 Second leg 1–3

Shamrock 1 (4) MF Molde FK 1 (5)

First leg 1–0 Second leg 0–1

Betis 3 AG AA Gent 1

First leg 3–0 Second leg 0–1

PA Panathinaikos 3 Víkingur Reykjavík 2

First leg 1–2 Second leg 2–0

AL APOEL Lefkosia 2 Celje 4

First leg 2–2 Second leg 0–2

OL Olimpija 1 Borac 0

First leg 1–0 Second leg 0–0

Round of 16

DI Djurgårdens IF 3 PA Pafos 1

First leg 0–1 Second leg 3–0

Rapid Wien 3 Borac 2

First leg 1–1 Second leg 2–1

København 1 CH Chelsea 3

First leg 1–2 Second leg 0–1

MF Molde FK 3 LW Legia Warszawa 4

First leg 3–2 Second leg 0–2

Betis 6 VS Vitória SC 2

First leg 2–2 Second leg 4–0

CB Cercle Brugge 2 JB Jagiellonia 3

First leg 0–3 Second leg 2–0

AF AC Fiorentina 5 PA Panathinaikos 4

First leg 2–3 Second leg 3–1

LU FC Lugano 5 (1) Celje 5 (3)

First leg 0–1 Second leg 5–4

Quarter-finals

Rapid Wien 2 DI Djurgårdens IF 4

First leg 1–0 Second leg 1–4

LW Legia Warszawa 2 CH Chelsea 4

First leg 0–3 Second leg 2–1

Betis 3 JB Jagiellonia 1

First leg 2–0 Second leg 1–1

AF AC Fiorentina 4 Celje 3

First leg 2–1 Second leg 2–2

Semi-finals

DI Djurgårdens IF 1 CH Chelsea 5

First leg 1–4 Second leg 0–1

Betis 4 AF AC Fiorentina 3

First leg 2–1 Second leg 2–2

Final

Betis 1 CH Chelsea 4

Two legs: Knockout play-off, Round of 16, Quarter-finals, and Semi-finals.